GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Graimondii_Gorai.002G058600 Gorai.002G058600	Chr02	6527425	6528830	Phytozome	v2.1	Gossypium_raimondii	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Graimondii_Gorai.002G058600.1 Gorai.002G058600.1 PAC:26795036	High	No	331		Get ORF Coding potential... Type: noncoding Potential: -0.940 Folding energies... MFEI: -20.453 AMFE: -0.501 GC content %: 40.785
Graimondii_Gorai.002G058600.2 Gorai.002G058600.2 PAC:26795037	High	No	1322		Get ORF Coding potential... Type: noncoding Potential: -0.912 Folding energies... MFEI: -22.269 AMFE: -0.565 GC content %: 39.410

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).