GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Graimondii_Gorai.002G143500 Gorai.002G143500	Chr02	25961706	25964440	Phytozome	v2.1	Gossypium_raimondii	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Graimondii_Gorai.002G143500.1 Gorai.002G143500.1 PAC:26793571	High	No	1260		Get ORF Coding potential... Type: noncoding Potential: -0.677 Folding energies... MFEI: -22.722 AMFE: -0.669 GC content %: 33.968
Graimondii_Gorai.002G143500.2 Gorai.002G143500.2 PAC:26793572	High	No	1011		Get ORF Coding potential... Type: noncoding Potential: -0.626 Folding energies... MFEI: -24.224 AMFE: -0.684 GC content %: 35.410
Graimondii_Gorai.002G143500.3 Gorai.002G143500.3 PAC:26793573	High	No	728		Get ORF Coding potential... Type: noncoding Potential: -0.537 Folding energies... MFEI: -21.703 AMFE: -0.625 GC content %: 34.753
Graimondii_Gorai.002G143500.4 Gorai.002G143500.4 PAC:26793574	High	No	776		Get ORF Coding potential... Type: noncoding Potential: -0.556 Folding energies... MFEI: -22.062 AMFE: -0.636 GC content %: 34.665

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).