GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Graimondii_Gorai.003G052300 Gorai.003G052300	Chr03	7987393	7990507	Phytozome	v2.1	Gossypium_raimondii	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Graimondii_Gorai.003G052300.3 Gorai.003G052300.3 PAC:26799045	High	No	839		Get ORF Coding potential... Type: noncoding Potential: -0.768 Folding energies... MFEI: -25.185 AMFE: -0.702 GC content %: 35.876

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).