Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Graimondii_Gorai.003G085700 Gorai.003G085700 |
Chr03 | 21702839 | 21706294 | Phytozome | v2.1 | Gossypium_raimondii | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Graimondii_Gorai.003G085700.1 Gorai.003G085700.1 PAC:26799111 |
Low | No | 758 | Get ORF Coding potential... Type: noncoding Potential: -0.933 Folding energies... MFEI: -23.760 AMFE: -0.574 GC content %: 41.425 | |
Graimondii_Gorai.003G085700.2 Gorai.003G085700.2 PAC:26799112 |
High | No | 1247 | Get ORF Coding potential... Type: noncoding Potential: -1.153 Folding energies... MFEI: -23.280 AMFE: -0.605 GC content %: 38.492 | |
Graimondii_Gorai.003G085700.3 Gorai.003G085700.3 PAC:26799113 |
High | No | 2123 | Get ORF Coding potential... Type: noncoding Potential: -1.219 Folding energies... MFEI: -24.258 AMFE: -0.654 GC content %: 37.117 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Graimondii_Gorai.003G085700.1 | SwissProt | 2015-06-01 | Q5BL73 | 9.0e-5 |