GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Graimondii_Gorai.003G130300 Gorai.003G130300	Chr03	38400558	38403059	Phytozome	v2.1	Gossypium_raimondii	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Graimondii_Gorai.003G130300.1 Gorai.003G130300.1 PAC:26797115	High	No	1179		Get ORF Coding potential... Type: noncoding Potential: -0.672 Folding energies... MFEI: -25.420 AMFE: -0.649 GC content %: 39.186
Graimondii_Gorai.003G130300.5 Gorai.003G130300.5 PAC:26797117	High	No	1311		Get ORF Coding potential... Type: noncoding Potential: -0.801 Folding energies... MFEI: -25.530 AMFE: -0.669 GC content %: 38.139
Graimondii_Gorai.003G130300.7 Gorai.003G130300.7 PAC:26797116	High	No	948		Get ORF Coding potential... Type: noncoding Potential: -0.657 Folding energies... MFEI: -25.158 AMFE: -0.633 GC content %: 39.768

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).