GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Graimondii_Gorai.004G008700 Gorai.004G008700	Chr04	598836	601086	Phytozome	v2.1	Gossypium_raimondii	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Graimondii_Gorai.004G008700.1 Gorai.004G008700.1 PAC:26774523	High	No	664		Get ORF Coding potential... Type: noncoding Potential: -1.055 Folding energies... MFEI: -25.678 AMFE: -0.639 GC content %: 40.211
Graimondii_Gorai.004G008700.2 Gorai.004G008700.2 PAC:26774524	High	No	610		Get ORF Coding potential... Type: noncoding Potential: -1.034 Folding energies... MFEI: -23.279 AMFE: -0.657 GC content %: 35.410
Graimondii_Gorai.004G008700.3 Gorai.004G008700.3 PAC:26774526	High	No	607		Get ORF Coding potential... Type: noncoding Potential: -1.033 Folding energies... MFEI: -23.624 AMFE: -0.670 GC content %: 35.255
Graimondii_Gorai.004G008700.4 Gorai.004G008700.4 PAC:26774525	High	No	640		Get ORF Coding potential... Type: noncoding Potential: -1.046 Folding energies... MFEI: -23.438 AMFE: -0.664 GC content %: 35.312

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).