GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Graimondii_Gorai.004G008800 Gorai.004G008800	Chr04	602566	604379	Phytozome	v2.1	Gossypium_raimondii	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Graimondii_Gorai.004G008800.1 Gorai.004G008800.1 PAC:26773466	High	No	695		Get ORF Coding potential... Type: noncoding Potential: -1.096 Folding energies... MFEI: -21.482 AMFE: -0.630 GC content %: 34.101
Graimondii_Gorai.004G008800.2 Gorai.004G008800.2 PAC:26773467	High	No	635		Get ORF Coding potential... Type: noncoding Potential: -1.075 Folding energies... MFEI: -22.378 AMFE: -0.649 GC content %: 34.488
Graimondii_Gorai.004G008800.3 Gorai.004G008800.3 PAC:26773468	High	No	615		Get ORF Coding potential... Type: noncoding Potential: -1.168 Folding energies... MFEI: -22.667 AMFE: -0.667 GC content %: 33.984

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).