GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Graimondii_Gorai.004G223700 Gorai.004G223700	Chr04	55823116	55824862	Phytozome	v2.1	Gossypium_raimondii	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Graimondii_Gorai.004G223700.1 Gorai.004G223700.1 PAC:26777180	High	No	733		Get ORF Coding potential... Type: noncoding Potential: -0.963 Folding energies... MFEI: -25.839 AMFE: -0.609 GC content %: 42.428
Graimondii_Gorai.004G223700.2 Gorai.004G223700.2 PAC:26777179	High	No	811		Get ORF Coding potential... Type: noncoding Potential: -0.990 Folding energies... MFEI: -21.332 AMFE: -0.565 GC content %: 37.731

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).