Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Graimondii_Gorai.004G291500 Gorai.004G291500 |
Chr04 | 62011288 | 62013347 | Phytozome | v2.1 | Gossypium_raimondii | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Graimondii_Gorai.004G291500.1 Gorai.004G291500.1 PAC:26772001 |
Low | No | 818 | Get ORF Coding potential... Type: noncoding Potential: -1.044 Folding energies... MFEI: -28.093 AMFE: -0.658 GC content %: 42.665 | |
Graimondii_Gorai.004G291500.2 Gorai.004G291500.2 PAC:26772002 |
Low | No | 780 | Get ORF Coding potential... Type: noncoding Potential: -1.033 Folding energies... MFEI: -28.179 AMFE: -0.646 GC content %: 43.590 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Graimondii_Gorai.004G291500.1 | SwissProt | 2015-06-01 | Q69BT7 | 1.0e-7 |
Graimondii_Gorai.004G291500.2 | SwissProt | 2015-06-01 | Q69BT7 | 9.0e-8 |