Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Graimondii_Gorai.005G050100 Gorai.005G050100 |
Chr05 | 4941555 | 4943986 | Phytozome | v2.1 | Gossypium_raimondii | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Graimondii_Gorai.005G050100.2 Gorai.005G050100.2 PAC:26802702 |
Low | No | 805 | Get ORF Coding potential... Type: noncoding Potential: -0.724 Folding energies... MFEI: -23.714 AMFE: -0.628 GC content %: 37.764 | |
Graimondii_Gorai.005G050100.3 Gorai.005G050100.3 PAC:26802700 |
Low | No | 1563 | Get ORF Coding potential... Type: noncoding Potential: -0.792 Folding energies... MFEI: -24.734 AMFE: -0.669 GC content %: 36.980 | |
Graimondii_Gorai.005G050100.4 Gorai.005G050100.4 PAC:26802701 |
Low | No | 836 | Get ORF Coding potential... Type: noncoding Potential: -0.648 Folding energies... MFEI: -23.062 AMFE: -0.612 GC content %: 37.679 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Graimondii_Gorai.005G050100.2 | SwissProt | 2015-06-01 | Q5ZIX3 | 1.0e-7 |
Graimondii_Gorai.005G050100.3 | SwissProt | 2015-06-01 | Q5ZIX3 | 1.0e-13 |
Graimondii_Gorai.005G050100.4 | SwissProt | 2015-06-01 | Q5ZIX3 | 5.0e-14 |