GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Graimondii_Gorai.005G091300 Gorai.005G091300	Chr05	12315723	12322047	Phytozome	v2.1	Gossypium_raimondii	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Graimondii_Gorai.005G091300.1 Gorai.005G091300.1 PAC:26805441	High	No	1205		Get ORF Coding potential... Type: noncoding Potential: -1.338 Folding energies... MFEI: -22.033 AMFE: -0.540 GC content %: 40.830
Graimondii_Gorai.005G091300.2 Gorai.005G091300.2 PAC:26805442	High	No	835		Get ORF Coding potential... Type: noncoding Potential: -1.257 Folding energies... MFEI: -20.359 AMFE: -0.517 GC content %: 39.401

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).