Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Graimondii_Gorai.005G102500 Gorai.005G102500 |
Chr05 | 17450598 | 17451190 | Phytozome | v2.1 | Gossypium_raimondii | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Graimondii_Gorai.005G102500.1 Gorai.005G102500.1 PAC:26803473 |
Low | No | 261 | Get ORF Coding potential... Type: noncoding Potential: -0.896 Folding energies... MFEI: -23.755 AMFE: -0.539 GC content %: 44.061 | |
Graimondii_Gorai.005G102500.2 Gorai.005G102500.2 PAC:26803474 |
Low | No | 545 | Get ORF Coding potential... Type: noncoding Potential: -1.239 Folding energies... MFEI: -25.486 AMFE: -0.643 GC content %: 39.633 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Graimondii_Gorai.005G102500.1 | SwissProt | 2015-06-01 | Q9SRR7 | 5.0e-7 |
Graimondii_Gorai.005G102500.2 | SwissProt | 2015-06-01 | Q9SRR7 | 1.0e-7 |