GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Graimondii_Gorai.005G108500 Gorai.005G108500	Chr05	19538562	19547968	Phytozome	v2.1	Gossypium_raimondii	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Graimondii_Gorai.005G108500.1 Gorai.005G108500.1 PAC:26804319	High	No	979		Get ORF Coding potential... Type: noncoding Potential: -0.320 Folding energies... MFEI: -23.299 AMFE: -0.683 GC content %: 34.116
Graimondii_Gorai.005G108500.2 Gorai.005G108500.2 PAC:26804320	High	No	1039		Get ORF Coding potential... Type: noncoding Potential: -0.187 Folding energies... MFEI: -23.792 AMFE: -0.651 GC content %: 36.574
Graimondii_Gorai.005G108500.3 Gorai.005G108500.3 PAC:26804321	High	No	952		Get ORF Coding potential... Type: noncoding Potential: -0.293 Folding energies... MFEI: -24.118 AMFE: -0.660 GC content %: 36.555

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).