GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Graimondii_Gorai.005G218100 Gorai.005G218100	Chr05	60131834	60133076	Phytozome	v2.1	Gossypium_raimondii	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Graimondii_Gorai.005G218100.1 Gorai.005G218100.1 PAC:26803366	High	No	461		Get ORF Coding potential... Type: noncoding Potential: -0.849 Folding energies... MFEI: -18.937 AMFE: -0.490 GC content %: 38.612
Graimondii_Gorai.005G218100.2 Gorai.005G218100.2 PAC:26803367	High	No	540		Get ORF Coding potential... Type: noncoding Potential: -0.998 Folding energies... MFEI: -22.463 AMFE: -0.554 GC content %: 40.556
Graimondii_Gorai.005G218100.3 Gorai.005G218100.3 PAC:26803368	High	No	397		Get ORF Coding potential... Type: noncoding Potential: -0.909 Folding energies... MFEI: -22.771 AMFE: -0.532 GC content %: 42.821

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).