GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Graimondii_Gorai.005G219700 Gorai.005G219700	Chr05	60285001	60288238	Phytozome	v2.1	Gossypium_raimondii	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Graimondii_Gorai.005G219700.1 Gorai.005G219700.1 PAC:26804167	High	No	1051		Get ORF Coding potential... Type: noncoding Potential: -0.210 Folding energies... MFEI: -23.606 AMFE: -0.617 GC content %: 38.249
Graimondii_Gorai.005G219700.2 Gorai.005G219700.2 PAC:26804168	High	No	1041		Get ORF Coding potential... Type: noncoding Potential: -0.208 Folding energies... MFEI: -23.449 AMFE: -0.613 GC content %: 38.232
Graimondii_Gorai.005G219700.3 Gorai.005G219700.3 PAC:26804169	High	No	1048		Get ORF Coding potential... Type: noncoding Potential: -0.344 Folding energies... MFEI: -25.344 AMFE: -0.657 GC content %: 38.550

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).