Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Graimondii_Gorai.006G243100 Gorai.006G243100 |
Chr06 | 48890249 | 48892936 | Phytozome | v2.1 | Gossypium_raimondii | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Graimondii_Gorai.006G243100.1 Gorai.006G243100.1 PAC:26832064 |
Low | Yes | 1061 | Get ORF Coding potential... Type: noncoding Potential: -0.775 Folding energies... MFEI: -25.231 AMFE: -0.737 GC content %: 34.213 | |
Graimondii_Gorai.006G243100.2 Gorai.006G243100.2 PAC:26832063 |
Low | Yes | 999 | Get ORF Coding potential... Type: noncoding Potential: -0.765 Folding energies... MFEI: -25.465 AMFE: -0.729 GC content %: 34.935 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Graimondii_Gorai.006G243100.1 | Rfam | 11.0 | MIR167_1 | 3.0e-16 |
Graimondii_Gorai.006G243100.2 | Rfam | 11.0 | MIR167_1 | 2.8e-16 |