GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Graimondii_Gorai.007G005800 Gorai.007G005800	Chr07	467928	468669	Phytozome	v2.1	Gossypium_raimondii	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Graimondii_Gorai.007G005800.1 Gorai.007G005800.1 PAC:26781119	High	No	552		Get ORF Coding potential... Type: noncoding Potential: -0.932 Folding energies... MFEI: -22.844 AMFE: -0.584 GC content %: 39.130
Graimondii_Gorai.007G005800.2 Gorai.007G005800.2 PAC:26781120	High	No	510		Get ORF Coding potential... Type: noncoding Potential: -0.922 Folding energies... MFEI: -22.294 AMFE: -0.574 GC content %: 38.824

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).