GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Graimondii_Gorai.007G102700 Gorai.007G102700	Chr07	7648202	7649333	Phytozome	v2.1	Gossypium_raimondii	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Graimondii_Gorai.007G102700.3 Gorai.007G102700.3 PAC:26784205	High	No	962		Get ORF Coding potential... Type: noncoding Potential: -0.587 Folding energies... MFEI: -24.096 AMFE: -0.626 GC content %: 38.462
Graimondii_Gorai.007G102700.4 Gorai.007G102700.4 PAC:26784206	High	No	839		Get ORF Coding potential... Type: noncoding Potential: -0.559 Folding energies... MFEI: -24.648 AMFE: -0.640 GC content %: 38.498

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).