GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Graimondii_Gorai.008G020000 Gorai.008G020000	Chr08	2311361	2312989	Phytozome	v2.1	Gossypium_raimondii	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Graimondii_Gorai.008G020000.1 Gorai.008G020000.1 PAC:26814938	High	No	880		Get ORF Coding potential... Type: noncoding Potential: -0.686 Folding energies... MFEI: -22.164 AMFE: -0.579 GC content %: 38.295
Graimondii_Gorai.008G020000.2 Gorai.008G020000.2 PAC:26814939	High	No	767		Get ORF Coding potential... Type: noncoding Potential: -0.778 Folding energies... MFEI: -24.211 AMFE: -0.573 GC content %: 42.243

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).