GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Graimondii_Gorai.008G139600 Gorai.008G139600	Chr08	39031777	39032590	Phytozome	v2.1	Gossypium_raimondii	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Graimondii_Gorai.008G139600.1 Gorai.008G139600.1 PAC:26815209	High	No	610		Get ORF Coding potential... Type: noncoding Potential: -0.759 Folding energies... MFEI: -24.164 AMFE: -0.644 GC content %: 37.541
Graimondii_Gorai.008G139600.2 Gorai.008G139600.2 PAC:26815210	High	No	607		Get ORF Coding potential... Type: noncoding Potential: -0.806 Folding energies... MFEI: -23.855 AMFE: -0.638 GC content %: 37.397

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).