GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Graimondii_Gorai.008G148200 Gorai.008G148200	Chr08	40225220	40227897	Phytozome	v2.1	Gossypium_raimondii	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Graimondii_Gorai.008G148200.1 Gorai.008G148200.1 PAC:26814729	High	No	1213		Get ORF Coding potential... Type: noncoding Potential: -0.368 Folding energies... MFEI: -24.839 AMFE: -0.598 GC content %: 41.550
Graimondii_Gorai.008G148200.2 Gorai.008G148200.2 PAC:26814728	High	No	1045		Get ORF Coding potential... Type: noncoding Potential: -0.029 Folding energies... MFEI: -23.388 AMFE: -0.558 GC content %: 41.914
Graimondii_Gorai.008G148200.3 Gorai.008G148200.3 PAC:26814730	High	No	1046		Get ORF Coding potential... Type: noncoding Potential: -0.232 Folding energies... MFEI: -24.761 AMFE: -0.601 GC content %: 41.205

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).