Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Graimondii_Gorai.008G202200 Gorai.008G202200 |
Chr08 | 48783516 | 48786696 | Phytozome | v2.1 | Gossypium_raimondii | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Graimondii_Gorai.008G202200.2 Gorai.008G202200.2 PAC:26813285 |
Low | No | 765 | Get ORF Coding potential... Type: noncoding Potential: -0.499 Folding energies... MFEI: -22.654 AMFE: -0.608 GC content %: 37.255 | |
Graimondii_Gorai.008G202200.3 Gorai.008G202200.3 PAC:26813283 |
Low | No | 809 | Get ORF Coding potential... Type: noncoding Potential: -0.597 Folding energies... MFEI: -22.336 AMFE: -0.621 GC content %: 35.970 | |
Graimondii_Gorai.008G202200.4 Gorai.008G202200.4 PAC:26813284 |
Low | No | 845 | Get ORF Coding potential... Type: noncoding Potential: -0.602 Folding energies... MFEI: -22.817 AMFE: -0.626 GC content %: 36.450 | |
Graimondii_Gorai.008G202200.5 Gorai.008G202200.5 PAC:26813282 |
Low | No | 731 | Get ORF Coding potential... Type: noncoding Potential: -0.516 Folding energies... MFEI: -21.587 AMFE: -0.619 GC content %: 34.884 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Graimondii_Gorai.008G202200.4 | SwissProt | 2015-06-01 | O82531 | 2.0e-4 |
Graimondii_Gorai.008G202200.5 | SwissProt | 2015-06-01 | O82531 | 2.0e-5 |
Graimondii_Gorai.008G202200.2 | SwissProt | 2015-06-01 | O82531 | 2.0e-4 |
Graimondii_Gorai.008G202200.3 | SwissProt | 2015-06-01 | O82531 | 2.0e-4 |