Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Graimondii_Gorai.008G210700 Gorai.008G210700 |
Chr08 | 49683422 | 49685618 | Phytozome | v2.1 | Gossypium_raimondii | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Graimondii_Gorai.008G210700.1 Gorai.008G210700.1 PAC:26815419 |
Low | No | 1067 | Get ORF Coding potential... Type: noncoding Potential: -0.938 Folding energies... MFEI: -24.330 AMFE: -0.621 GC content %: 39.175 | |
Graimondii_Gorai.008G210700.2 Gorai.008G210700.2 PAC:26815417 |
Low | No | 1057 | Get ORF Coding potential... Type: noncoding Potential: -0.557 Folding energies... MFEI: -24.172 AMFE: -0.619 GC content %: 39.073 | |
Graimondii_Gorai.008G210700.3 Gorai.008G210700.3 PAC:26815418 |
Low | No | 976 | Get ORF Coding potential... Type: noncoding Potential: -0.537 Folding energies... MFEI: -25.441 AMFE: -0.633 GC content %: 40.164 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Graimondii_Gorai.008G210700.1 | SwissProt | 2015-06-01 | Q9C1W5 | 5.0e-5 |
Graimondii_Gorai.008G210700.2 | SwissProt | 2015-06-01 | Q7S6S4 | 7.0e-12 |
Graimondii_Gorai.008G210700.3 | SwissProt | 2015-06-01 | Q7S6S4 | 5.0e-12 |