Gene

Graimondii Gorai.008G225000

From GreeNC


Gene information
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This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name Chrom. Start End Source Assembly Species Details

Graimondii_Gorai.008G225000
Gorai.008G225000
Chr08 51165805 51167086 Phytozome v2.1 Gossypium_raimondii
Coding?
No


Transcript features
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This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name Confidence Pre-miRNA Length Sequence Details

Graimondii_Gorai.008G225000.1
Gorai.008G225000.1
PAC:26815471
High No 439
Coding potential...
Type: noncoding Potential: -0.183
Folding energies...
MFEI: -22.825 AMFE: -0.573
GC content
%: 39.863


Gene models
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Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).

Gorai.008G225000.png