Gene

Graimondii Gorai.008G298400

From GreeNC


Gene information
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This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name Chrom. Start End Source Assembly Species Details

Graimondii_Gorai.008G298400
Gorai.008G298400
Chr08 57072296 57078672 Phytozome v2.1 Gossypium_raimondii
Coding?
No


Transcript features
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This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name Confidence Pre-miRNA Length Sequence Details

Graimondii_Gorai.008G298400.1
Gorai.008G298400.1
PAC:26816689
High No 762
Coding potential...
Type: noncoding Potential: -1.037
Folding energies...
MFEI: -24.265 AMFE: -0.629
GC content
%: 38.583
Graimondii_Gorai.008G298400.2
Gorai.008G298400.2
PAC:26816690
High No 868
Coding potential...
Type: noncoding Potential: -1.253
Folding energies...
MFEI: -24.908 AMFE: -0.627
GC content
%: 39.747
Graimondii_Gorai.008G298400.3
Gorai.008G298400.3
PAC:26816691
High No 705
Coding potential...
Type: noncoding Potential: -1.337
Folding energies...
MFEI: -25.277 AMFE: -0.636
GC content
%: 39.716


Gene models
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Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).

Gorai.008G298400.png