Gene
Graimondii Gorai.009G019800
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| Graimondii_Gorai.009G019800 Gorai.009G019800 |
Chr09 | 1523901 | 1525718 | Phytozome | v2.1 | Gossypium_raimondii | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| Graimondii_Gorai.009G019800.1 Gorai.009G019800.1 PAC:26764406 |
High | No | 1025 | Get ORF Coding potential... Type: noncoding Potential: -1.162 Folding energies... MFEI: -22.917 AMFE: -0.615 GC content %: 37.268 | |
| Graimondii_Gorai.009G019800.2 Gorai.009G019800.2 PAC:26764403 |
High | No | 1370 | Get ORF Coding potential... Type: noncoding Potential: -1.053 Folding energies... MFEI: -22.029 AMFE: -0.606 GC content %: 36.350 | |
| Graimondii_Gorai.009G019800.3 Gorai.009G019800.3 PAC:26764404 |
High | No | 1244 | Get ORF Coding potential... Type: noncoding Potential: -1.020 Folding energies... MFEI: -22.195 AMFE: -0.600 GC content %: 36.977 | |
| Graimondii_Gorai.009G019800.4 Gorai.009G019800.4 PAC:26764405 |
High | No | 945 | Get ORF Coding potential... Type: noncoding Potential: -1.142 Folding energies... MFEI: -22.497 AMFE: -0.604 GC content %: 37.249 | |
| Graimondii_Gorai.009G019800.5 Gorai.009G019800.5 PAC:26764407 |
High | No | 1104 | Get ORF Coding potential... Type: noncoding Potential: -1.023 Folding energies... MFEI: -23.351 AMFE: -0.598 GC content %: 39.040 | |
| Graimondii_Gorai.009G019800.6 Gorai.009G019800.6 PAC:26764408 |
High | No | 1066 | Get ORF Coding potential... Type: noncoding Potential: -1.017 Folding energies... MFEI: -24.240 AMFE: -0.617 GC content %: 39.306 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
