Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Graimondii_Gorai.010G155100 Gorai.010G155100 |
Chr10 | 42721039 | 42722998 | Phytozome | v2.1 | Gossypium_raimondii | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Graimondii_Gorai.010G155100.1 Gorai.010G155100.1 PAC:26757738 |
Low | No | 1097 | Get ORF Coding potential... Type: noncoding Potential: -0.569 Folding energies... MFEI: -26.208 AMFE: -0.706 GC content %: 37.101 | |
Graimondii_Gorai.010G155100.2 Gorai.010G155100.2 PAC:26757740 |
Low | No | 1236 | Get ORF Coding potential... Type: noncoding Potential: -0.844 Folding energies... MFEI: -25.307 AMFE: -0.667 GC content %: 37.945 | |
Graimondii_Gorai.010G155100.3 Gorai.010G155100.3 PAC:26757739 |
Low | No | 1055 | Get ORF Coding potential... Type: noncoding Potential: -0.596 Folding energies... MFEI: -26.758 AMFE: -0.702 GC content %: 38.104 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Graimondii_Gorai.010G155100.3 | RepBase (RepeatMasker) | 2014-01-31 | Gypsy-31_VV-I | |
Graimondii_Gorai.010G155100.1 | RepBase (RepeatMasker) | 2014-01-31 | Gypsy-31_VV-I | |
Graimondii_Gorai.010G155100.2 | RepBase (RepeatMasker) | 2014-01-31 | Copia-143_SB-I |