GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Graimondii_Gorai.011G228700 Gorai.011G228700	Chr11	54202941	54204171	Phytozome	v2.1	Gossypium_raimondii	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Graimondii_Gorai.011G228700.1 Gorai.011G228700.1 PAC:26808963	High	No	863		Get ORF Coding potential... Type: noncoding Potential: -1.160 Folding energies... MFEI: -21.066 AMFE: -0.516 GC content %: 40.788
Graimondii_Gorai.011G228700.2 Gorai.011G228700.2 PAC:26808964	High	No	1057		Get ORF Coding potential... Type: noncoding Potential: -1.211 Folding energies... MFEI: -20.189 AMFE: -0.512 GC content %: 39.451
Graimondii_Gorai.011G228700.3 Gorai.011G228700.3 PAC:26808965	High	No	1035		Get ORF Coding potential... Type: noncoding Potential: -1.203 Folding energies... MFEI: -19.855 AMFE: -0.502 GC content %: 39.517
Graimondii_Gorai.011G228700.4 Gorai.011G228700.4 PAC:26808966	High	No	841		Get ORF Coding potential... Type: noncoding Potential: -1.161 Folding energies... MFEI: -20.523 AMFE: -0.502 GC content %: 40.904

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).