GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Graimondii_Gorai.011G263300 Gorai.011G263300	Chr11	59414261	59416222	Phytozome	v2.1	Gossypium_raimondii	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Graimondii_Gorai.011G263300.1 Gorai.011G263300.1 PAC:26812551	High	No	449		Get ORF Coding potential... Type: noncoding Potential: -0.170 Folding energies... MFEI: -22.584 AMFE: -0.590 GC content %: 38.307
Graimondii_Gorai.011G263300.2 Gorai.011G263300.2 PAC:26812552	High	No	491		Get ORF Coding potential... Type: noncoding Potential: -0.326 Folding energies... MFEI: -22.281 AMFE: -0.591 GC content %: 37.678
Graimondii_Gorai.011G263300.3 Gorai.011G263300.3 PAC:26812553	High	No	373		Get ORF Coding potential... Type: noncoding Potential: -0.447 Folding energies... MFEI: -23.485 AMFE: -0.576 GC content %: 40.751
Graimondii_Gorai.011G263300.4 Gorai.011G263300.4 PAC:26812554	High	No	631		Get ORF Coding potential... Type: noncoding Potential: -0.615 Folding energies... MFEI: -23.296 AMFE: -0.615 GC content %: 37.876

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).