GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Graimondii_Gorai.012G036400 Gorai.012G036400	Chr12	4497303	4498390	Phytozome	v2.1	Gossypium_raimondii	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Graimondii_Gorai.012G036400.1 Gorai.012G036400.1 PAC:26825508	High	No	966		Get ORF Coding potential... Type: noncoding Potential: -0.628 Folding energies... MFEI: -22.526 AMFE: -0.598 GC content %: 37.681
Graimondii_Gorai.012G036400.2 Gorai.012G036400.2 PAC:26825509	High	No	1002		Get ORF Coding potential... Type: noncoding Potential: -1.015 Folding energies... MFEI: -22.146 AMFE: -0.584 GC content %: 37.924
Graimondii_Gorai.012G036400.3 Gorai.012G036400.3 PAC:26825510	High	No	958		Get ORF Coding potential... Type: noncoding Potential: -0.977 Folding energies... MFEI: -22.234 AMFE: -0.590 GC content %: 37.683

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).