Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Graimondii_Gorai.012G044500 Gorai.012G044500 |
Chr12 | 5565566 | 5567624 | Phytozome | v2.1 | Gossypium_raimondii | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Graimondii_Gorai.012G044500.1 Gorai.012G044500.1 PAC:26827991 |
Low | No | 1489 | Get ORF Coding potential... Type: noncoding Potential: -0.829 Folding energies... MFEI: -25.111 AMFE: -0.644 GC content %: 39.019 | |
Graimondii_Gorai.012G044500.2 Gorai.012G044500.2 PAC:26827990 |
High | No | 1344 | Get ORF Coding potential... Type: noncoding Potential: -0.810 Folding energies... MFEI: -24.412 AMFE: -0.619 GC content %: 39.435 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Graimondii_Gorai.012G044500.1 | SwissProt | 2015-06-01 | P37710 | 5.0e-6 |