Gene
Graimondii Gorai.013G010600
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| Graimondii_Gorai.013G010600 Gorai.013G010600 |
Chr13 | 705417 | 708507 | Phytozome | v2.1 | Gossypium_raimondii | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| Graimondii_Gorai.013G010600.1 Gorai.013G010600.1 PAC:26788073 |
High | No | 982 | Get ORF Coding potential... Type: noncoding Potential: -0.536 Folding energies... MFEI: -21.018 AMFE: -0.672 GC content %: 31.263 | |
| Graimondii_Gorai.013G010600.2 Gorai.013G010600.2 PAC:26788076 |
High | No | 983 | Get ORF Coding potential... Type: noncoding Potential: -0.513 Folding energies... MFEI: -21.628 AMFE: -0.669 GC content %: 32.350 | |
| Graimondii_Gorai.013G010600.3 Gorai.013G010600.3 PAC:26788077 |
High | No | 783 | Get ORF Coding potential... Type: noncoding Potential: -0.463 Folding energies... MFEI: -21.596 AMFE: -0.666 GC content %: 32.439 | |
| Graimondii_Gorai.013G010600.4 Gorai.013G010600.4 PAC:26788074 |
High | No | 862 | Get ORF Coding potential... Type: noncoding Potential: -0.485 Folding energies... MFEI: -21.636 AMFE: -0.645 GC content %: 33.527 | |
| Graimondii_Gorai.013G010600.5 Gorai.013G010600.5 PAC:26788075 |
High | No | 785 | Get ORF Coding potential... Type: noncoding Potential: -0.464 Folding energies... MFEI: -21.006 AMFE: -0.647 GC content %: 32.484 | |
| Graimondii_Gorai.013G010600.6 Gorai.013G010600.6 PAC:26788078 |
High | No | 750 | Get ORF Coding potential... Type: noncoding Potential: -0.453 Folding energies... MFEI: -20.613 AMFE: -0.621 GC content %: 33.200 | |
| Graimondii_Gorai.013G010600.7 Gorai.013G010600.7 PAC:26788079 |
High | No | 645 | Get ORF Coding potential... Type: noncoding Potential: -0.415 Folding energies... MFEI: -19.798 AMFE: -0.626 GC content %: 31.628 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
