GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Graimondii_Gorai.013G073600 Gorai.013G073600	Chr13	8892468	8893441	Phytozome	v2.1	Gossypium_raimondii	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Graimondii_Gorai.013G073600.1 Gorai.013G073600.1 PAC:26790046	High	No	860		Get ORF Coding potential... Type: noncoding Potential: -1.070 Folding energies... MFEI: -21.453 AMFE: -0.593 GC content %: 36.163
Graimondii_Gorai.013G073600.2 Gorai.013G073600.2 PAC:26790045	High	No	651		Get ORF Coding potential... Type: noncoding Potential: -0.901 Folding energies... MFEI: -22.857 AMFE: -0.605 GC content %: 37.788

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).