GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Graimondii_Gorai.013G104000 Gorai.013G104000	Chr13	20582712	20583679	Phytozome	v2.1	Gossypium_raimondii	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Graimondii_Gorai.013G104000.1 Gorai.013G104000.1 PAC:26788987	High	No	580		Get ORF Coding potential... Type: noncoding Potential: -0.500 Folding energies... MFEI: -24.017 AMFE: -0.611 GC content %: 39.310
Graimondii_Gorai.013G104000.2 Gorai.013G104000.2 PAC:26788986	High	No	714		Get ORF Coding potential... Type: noncoding Potential: -0.559 Folding energies... MFEI: -24.146 AMFE: -0.629 GC content %: 38.375

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).