GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Graimondii_Gorai.013G137900 Gorai.013G137900	Chr13	36793643	36796624	Phytozome	v2.1	Gossypium_raimondii	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Graimondii_Gorai.013G137900.1 Gorai.013G137900.1 PAC:26789366	High	No	987		Get ORF Coding potential... Type: noncoding Potential: -1.155 Folding energies... MFEI: -26.028 AMFE: -0.654 GC content %: 39.818
Graimondii_Gorai.013G137900.2 Gorai.013G137900.2 PAC:26789364	High	No	942		Get ORF Coding potential... Type: noncoding Potential: -0.634 Folding energies... MFEI: -24.947 AMFE: -0.628 GC content %: 39.703
Graimondii_Gorai.013G137900.3 Gorai.013G137900.3 PAC:26789363	High	No	791		Get ORF Coding potential... Type: noncoding Potential: -0.590 Folding energies... MFEI: -26.144 AMFE: -0.629 GC content %: 41.593
Graimondii_Gorai.013G137900.4 Gorai.013G137900.4 PAC:26789365	High	No	909		Get ORF Coding potential... Type: noncoding Potential: -0.591 Folding energies... MFEI: -24.862 AMFE: -0.630 GC content %: 39.494

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).