GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Graimondii_Gorai.N015800 Gorai.N015800	scaffold_116	268	1961	Phytozome	v2.1	Gossypium_raimondii	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Graimondii_Gorai.N015800.1 Gorai.N015800.1 PAC:26791567	High	No	784		Get ORF Coding potential... Type: noncoding Potential: -0.419 Folding energies... MFEI: -22.844 AMFE: -0.642 GC content %: 35.587
Graimondii_Gorai.N015800.2 Gorai.N015800.2 PAC:26791568	High	No	484		Get ORF Coding potential... Type: noncoding Potential: -0.423 Folding energies... MFEI: -24.318 AMFE: -0.676 GC content %: 35.950

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).