GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Klaxiflora_Kalax.0001s0004 Kalax.0001s0004	scaffold_1	31001	31863	Phytozome		[[Species:|]]"Species:" cannot be used as a page name in this wiki.	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Klaxiflora_Kalax.0001s0004.1 Kalax.0001s0004.1 PAC:32560047	High	No	714		Get ORF Coding potential... Type: noncoding Potential: -1.231 Folding energies... MFEI: -25.084 AMFE: -0.595 GC content %: 42.157
Klaxiflora_Kalax.0001s0004.2 Kalax.0001s0004.2 PAC:32560048	High	No	648		Get ORF Coding potential... Type: noncoding Potential: -1.212 Folding energies... MFEI: -26.219 AMFE: -0.632 GC content %: 41.512

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).