GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Klaxiflora_Kalax.0005s0100 Kalax.0005s0100	scaffold_5	906363	908603	Phytozome		[[Species:|]]"Species:" cannot be used as a page name in this wiki.	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Klaxiflora_Kalax.0005s0100.1 Kalax.0005s0100.1 PAC:32547962	High	No	1345		Get ORF Coding potential... Type: noncoding Potential: -1.221 Folding energies... MFEI: -23.398 AMFE: -0.668 GC content %: 35.019
Klaxiflora_Kalax.0005s0100.2 Kalax.0005s0100.2 PAC:32547963	High	No	364		Get ORF Coding potential... Type: noncoding Potential: -0.909 Folding energies... MFEI: -30.110 AMFE: -0.641 GC content %: 46.978

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).