GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Klaxiflora_Kalax.0015s0187 Kalax.0015s0187	scaffold_15	1681144	1682033	Phytozome		[[Species:|]]"Species:" cannot be used as a page name in this wiki.	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Klaxiflora_Kalax.0015s0187.1 Kalax.0015s0187.1 PAC:32543243	High	No	783		Get ORF Coding potential... Type: noncoding Potential: -1.045 Folding energies... MFEI: -24.534 AMFE: -0.580 GC content %: 42.273
Klaxiflora_Kalax.0015s0187.2 Kalax.0015s0187.2 PAC:32543244	High	No	678		Get ORF Coding potential... Type: noncoding Potential: -1.008 Folding energies... MFEI: -25.147 AMFE: -0.592 GC content %: 42.478
Klaxiflora_Kalax.0015s0187.3 Kalax.0015s0187.3 PAC:32543245	High	No	712		Get ORF Coding potential... Type: noncoding Potential: -1.021 Folding energies... MFEI: -25.253 AMFE: -0.593 GC content %: 42.556

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).