Gene
Klaxiflora Kalax.0027s0117
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| Klaxiflora_Kalax.0027s0117 Kalax.0027s0117 |
scaffold_27 | 998480 | 1000431 | Phytozome | [[Species:|]]"Species:" cannot be used as a page name in this wiki. | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| Klaxiflora_Kalax.0027s0117.1 Kalax.0027s0117.1 PAC:32595997 |
High | No | 1351 | Get ORF Coding potential... Type: noncoding Potential: -1.107 Folding energies... MFEI: -26.847 AMFE: -0.617 GC content %: 43.523 | |
| Klaxiflora_Kalax.0027s0117.2 Kalax.0027s0117.2 PAC:32595999 |
High | No | 1287 | Get ORF Coding potential... Type: noncoding Potential: -1.099 Folding energies... MFEI: -26.558 AMFE: -0.602 GC content %: 44.134 | |
| Klaxiflora_Kalax.0027s0117.3 Kalax.0027s0117.3 PAC:32596001 |
High | No | 1244 | Get ORF Coding potential... Type: noncoding Potential: -1.122 Folding energies... MFEI: -26.471 AMFE: -0.597 GC content %: 44.373 | |
| Klaxiflora_Kalax.0027s0117.4 Kalax.0027s0117.4 PAC:32596002 |
High | No | 994 | Get ORF Coding potential... Type: noncoding Potential: -1.077 Folding energies... MFEI: -28.249 AMFE: -0.608 GC content %: 46.479 | |
| Klaxiflora_Kalax.0027s0117.5 Kalax.0027s0117.5 PAC:32595998 |
High | No | 1036 | Get ORF Coding potential... Type: noncoding Potential: -1.056 Folding energies... MFEI: -28.349 AMFE: -0.616 GC content %: 46.042 | |
| Klaxiflora_Kalax.0027s0117.6 Kalax.0027s0117.6 PAC:32596000 |
High | No | 1104 | Get ORF Coding potential... Type: noncoding Potential: -1.069 Folding energies... MFEI: -28.388 AMFE: -0.627 GC content %: 45.290 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
