GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Klaxiflora_Kalax.0036s0005 Kalax.0036s0005	scaffold_36	33374	37503	Phytozome		[[Species:|]]"Species:" cannot be used as a page name in this wiki.	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Klaxiflora_Kalax.0036s0005.1 Kalax.0036s0005.1 PAC:32545568	High	No	3519		Get ORF Coding potential... Type: noncoding Potential: -1.137 Folding energies... MFEI: -26.576 AMFE: -0.687 GC content %: 38.704
Klaxiflora_Kalax.0036s0005.2 Kalax.0036s0005.2 PAC:32545569	High	No	3313		Get ORF Coding potential... Type: noncoding Potential: -1.134 Folding energies... MFEI: -26.861 AMFE: -0.683 GC content %: 39.300

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).