GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Klaxiflora_Kalax.0037s0146 Kalax.0037s0146	scaffold_37	1183292	1187231	Phytozome		[[Species:|]]"Species:" cannot be used as a page name in this wiki.	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Klaxiflora_Kalax.0037s0146.2 Kalax.0037s0146.2 PAC:32533589	High	No	1699		Get ORF Coding potential... Type: noncoding Potential: -0.645 Folding energies... MFEI: -23.208 AMFE: -0.654 GC content %: 35.491
Klaxiflora_Kalax.0037s0146.3 Kalax.0037s0146.3 PAC:32533590	High	No	1360		Get ORF Coding potential... Type: noncoding Potential: -0.682 Folding energies... MFEI: -23.809 AMFE: -0.637 GC content %: 37.353

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).