GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Klaxiflora_Kalax.0039s0112 Kalax.0039s0112	scaffold_39	807173	808305	Phytozome		[[Species:|]]"Species:" cannot be used as a page name in this wiki.	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Klaxiflora_Kalax.0039s0112.1 Kalax.0039s0112.1 PAC:32572811	High	No	1034		Get ORF Coding potential... Type: noncoding Potential: -0.970 Folding energies... MFEI: -22.495 AMFE: -0.543 GC content %: 41.393
Klaxiflora_Kalax.0039s0112.2 Kalax.0039s0112.2 PAC:32572812	High	No	969		Get ORF Coding potential... Type: noncoding Potential: -0.957 Folding energies... MFEI: -23.220 AMFE: -0.523 GC content %: 44.376

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).