Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Klaxiflora_Kalax.0045s0107 Kalax.0045s0107 |
scaffold_45 | 805776 | 806750 | Phytozome | [[Species:|]]"Species:" cannot be used as a page name in this wiki. | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Klaxiflora_Kalax.0045s0107.1 Kalax.0045s0107.1 PAC:32557492 |
Low | No | 640 | Get ORF Coding potential... Type: noncoding Potential: -1.080 Folding energies... MFEI: -28.828 AMFE: -0.615 GC content %: 46.875 | |
Klaxiflora_Kalax.0045s0107.2 Kalax.0045s0107.2 PAC:32557493 |
Low | No | 797 | Get ORF Coding potential... Type: noncoding Potential: -1.080 Folding energies... MFEI: -30.627 AMFE: -0.665 GC content %: 46.048 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Klaxiflora_Kalax.0045s0107.1 | SwissProt | 2015-06-01 | Q8GYN5 | 3.0e-7 |
Klaxiflora_Kalax.0045s0107.2 | SwissProt | 2015-06-01 | Q8GYN5 | 2.0e-5 |