Gene
Klaxiflora Kalax.0047s0110
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| Klaxiflora_Kalax.0047s0110 Kalax.0047s0110 |
scaffold_47 | 901996 | 904168 | Phytozome | [[Species:|]]"Species:" cannot be used as a page name in this wiki. | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| Klaxiflora_Kalax.0047s0110.1 Kalax.0047s0110.1 PAC:32573362 |
High | No | 1592 | Get ORF Coding potential... Type: noncoding Potential: -1.002 Folding energies... MFEI: -28.442 AMFE: -0.698 GC content %: 40.766 | |
| Klaxiflora_Kalax.0047s0110.2 Kalax.0047s0110.2 PAC:32573364 |
High | No | 1390 | Get ORF Coding potential... Type: noncoding Potential: -0.983 Folding energies... MFEI: -29.360 AMFE: -0.701 GC content %: 41.871 | |
| Klaxiflora_Kalax.0047s0110.3 Kalax.0047s0110.3 PAC:32573365 |
High | No | 1061 | Get ORF Coding potential... Type: noncoding Potential: -0.955 Folding energies... MFEI: -29.237 AMFE: -0.673 GC content %: 43.450 | |
| Klaxiflora_Kalax.0047s0110.4 Kalax.0047s0110.4 PAC:32573366 |
High | No | 1116 | Get ORF Coding potential... Type: noncoding Potential: -0.928 Folding energies... MFEI: -29.480 AMFE: -0.676 GC content %: 43.638 | |
| Klaxiflora_Kalax.0047s0110.5 Kalax.0047s0110.5 PAC:32573363 |
High | No | 1129 | Get ORF Coding potential... Type: noncoding Potential: -0.962 Folding energies... MFEI: -29.247 AMFE: -0.678 GC content %: 43.136 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
