GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Klaxiflora_Kalax.0053s0071 Kalax.0053s0071	scaffold_53	553813	555085	Phytozome		[[Species:|]]"Species:" cannot be used as a page name in this wiki.	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Klaxiflora_Kalax.0053s0071.1 Kalax.0053s0071.1 PAC:32539066	High	No	1057		Get ORF Coding potential... Type: noncoding Potential: -1.293 Folding energies... MFEI: -26.944 AMFE: -0.659 GC content %: 40.870
Klaxiflora_Kalax.0053s0071.2 Kalax.0053s0071.2 PAC:32539067	High	No	652		Get ORF Coding potential... Type: noncoding Potential: -1.238 Folding energies... MFEI: -28.942 AMFE: -0.640 GC content %: 45.245

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).