GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Klaxiflora_Kalax.0058s0079 Kalax.0058s0079	scaffold_58	696405	697504	Phytozome		[[Species:|]]"Species:" cannot be used as a page name in this wiki.	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Klaxiflora_Kalax.0058s0079.1 Kalax.0058s0079.1 PAC:32578914	High	No	844		Get ORF Coding potential... Type: noncoding Potential: -0.739 Folding energies... MFEI: -27.879 AMFE: -0.641 GC content %: 43.483
Klaxiflora_Kalax.0058s0079.2 Kalax.0058s0079.2 PAC:32578915	High	No	922		Get ORF Coding potential... Type: noncoding Potential: -0.811 Folding energies... MFEI: -28.319 AMFE: -0.650 GC content %: 43.601

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).