GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Klaxiflora_Kalax.0064s0004 Kalax.0064s0004	scaffold_64	41631	43785	Phytozome		[[Species:|]]"Species:" cannot be used as a page name in this wiki.	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Klaxiflora_Kalax.0064s0004.1 Kalax.0064s0004.1 PAC:32537815	High	No	990		Get ORF Coding potential... Type: noncoding Potential: -0.578 Folding energies... MFEI: -26.414 AMFE: -0.629 GC content %: 42.020
Klaxiflora_Kalax.0064s0004.2 Kalax.0064s0004.2 PAC:32537817	High	No	879		Get ORF Coding potential... Type: noncoding Potential: -0.546 Folding energies... MFEI: -25.370 AMFE: -0.596 GC content %: 42.548
Klaxiflora_Kalax.0064s0004.3 Kalax.0064s0004.3 PAC:32537816	High	No	887		Get ORF Coding potential... Type: noncoding Potential: -0.549 Folding energies... MFEI: -26.539 AMFE: -0.618 GC content %: 42.954

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).