GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Klaxiflora_Kalax.0066s0004 Kalax.0066s0004	scaffold_66	22532	25151	Phytozome		[[Species:|]]"Species:" cannot be used as a page name in this wiki.	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Klaxiflora_Kalax.0066s0004.1 Kalax.0066s0004.1 PAC:32566872	High	No	2346		Get ORF Coding potential... Type: noncoding Potential: -1.232 Folding energies... MFEI: -27.033 AMFE: -0.707 GC content %: 38.235
Klaxiflora_Kalax.0066s0004.2 Kalax.0066s0004.2 PAC:32566873	High	No	1843		Get ORF Coding potential... Type: noncoding Potential: -1.204 Folding energies... MFEI: -28.079 AMFE: -0.700 GC content %: 40.098

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).