GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Klaxiflora_Kalax.0086s0083 Kalax.0086s0083	scaffold_86	637108	638143	Phytozome		[[Species:|]]"Species:" cannot be used as a page name in this wiki.	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Klaxiflora_Kalax.0086s0083.1 Kalax.0086s0083.1 PAC:32561761	High	No	917		Get ORF Coding potential... Type: noncoding Potential: -0.929 Folding energies... MFEI: -24.809 AMFE: -0.519 GC content %: 47.764
Klaxiflora_Kalax.0086s0083.2 Kalax.0086s0083.2 PAC:32561762	High	No	914		Get ORF Coding potential... Type: noncoding Potential: -0.928 Folding energies... MFEI: -24.661 AMFE: -0.517 GC content %: 47.702
Klaxiflora_Kalax.0086s0083.3 Kalax.0086s0083.3 PAC:32561763	High	No	736		Get ORF Coding potential... Type: noncoding Potential: -0.874 Folding energies... MFEI: -27.609 AMFE: -0.552 GC content %: 50.000

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).